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Blast-list
Choose program to use and database to search:
Program: BLASTN
Use
MegaBlast
Database
nt
YBT_020_nt
YBT_1520_nt
YBT_1518_nt
Bsn5_nt
B.t_kurstaki
nr
BC_genome
BC_WGS
Enter here your input data as
Sequence in FASTA format
Accession or GI
Or load it from disk
Please read about
FASTA
format description
Set subsequence: From  
    To
The query sequence is
filtered
for low complexity regions by default.
Filter
Low complexity
Mask for lookup table only
Mask lower case
E-value
0.0001
0.01
1
10
100
1000
Perform ungapped alignment
Word Size
12
12
16
20
24
28
32
48
64
Percent Identity
None
99
98
95
90
85
80
75
70
60
Discontiguous Word options
Template length
Contiguous
16
18
21
Template type
Coding
Non-coding
Two templates
Require 2 word hits for extension
Other advanced options:
Show
Tax Blast reports
NCBI-gi
Graphical Overview
Alignment view
Pairwise
query-anchored with identities
query-anchored without identities
flat query-anchored with identities
flat query-anchored without identities
BLAST XML
Hit Table
Descriptions
0
10
50
100
250
500
Alignments
0
10
50
100
250
500
Color schema
No color schema
Color schema 1
Color schema 2
Color schema 3
Color schema 4
Color schema 5
Color schema 6
Return alignment endpoints only
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