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Choose program to use and database to search:
Program
Protein vs. CDD
DNA vs. CDD
Database
test_CDD_db
Enter here your input data as
Sequence in FASTA format
Accession or GI
Or load it from disk
Please read about
FASTA
format description
The query sequence is
filtered
for low complexity regions by default.
Filter
Low complexity
Mask for lookup table only
E-value
0.0001
0.01
1
10
100
1000
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Query Genetic Codes (Translated RPS Blast)
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Other advanced options:
Graphical Overview
Alignment view
Pairwise
query-anchored with identities
query-anchored without identities
flat query-anchored with identities
flat query-anchored without identities
BLAST XML
Hit Table
Descriptions
0
10
50
100
250
500
Alignments
0
10
50
100
250
500
Color schema
No color schema
Color schema 1
Color schema 2
Color schema 3
Color schema 4
Color schema 5
Color schema 6
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